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11/11/2008

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GeneChip^® Human Mapping 100K Set

The GeneChip® Human Mapping 100K Set is part of a growing family of products for copy number analysis. It is comprised of a set of two arrays that provide the highest resolution copy number analysis using the proven, easy-to-use GeneChip® Mapping Assay. With a mean marker distance of 26 kb, the Mapping 100K Set provides the highest genomic coverage, giving researchers more power to detect changes in chromosomal copy number. The Mapping 100K Set is the only technology to provide both copy number and allele-specific information, allowing researchers to discover copy neutral changes.

100,000 SNPs

The GeneChip Mapping 100K Set has also been used for other applications, including population genetics, linkage disequilibrium analysis, and whole-genome association studies. The new GeneChip® Mapping 500K Array Set provides more power to understand the genetic differences between individuals, and is the recommended product for these applications.

Benefits of the Mapping 100K Set

Copy number and allele-specific information from a single experiment
Highest resolution analysis for copy number
Visualize copy number, genotype, and expression data within the context of the genome and gene annotations
- Learn more about the Integrated Genome Browser
Proven approach for copy number analysis
- See list of nearly 250 publications (pdf, 159 KB) on mapping assay
Growing family of publicly available analysis solutions
- Learn more about analysis solutions for copy number

Data Sheets

Human Mapping 100K Set (pdf, 172 KB)

Application Notes

Microarrays in Cancer Research (pdf, 423 KB)

Part #	Description	Details
900518	GeneChip® Human Mapping 50K Array Xba 240	Contains 30 Mapping 50K Xba Arrays
900523	GeneChip® Human Mapping 50K Array Hind 240	Contains 30 Mapping 50K Hind Arrays
900520	GeneChip® Mapping 50K Xba Assay Kit	Sufficient for 30 reactions
900521	GeneChip® Mapping 50K Hind Assay Kit	Sufficient for 30 reactions
900807	GeneChip® Human Mapping 50K Xba Adaptor	Sufficient for 30 reactions
900808	GeneChip® Human Mapping 50K Hind Adaptor	Sufficient for 30 reactions
900534	PCR Primer 001	Sufficient for 100 PCR reactions

Required Products

Part #	Description	Details
	Affymetrix® GeneChip® Command Console® Software	Available Via Download
	Affymetrix® Genotyping Console™ Software	Available Via Download
00-0079	GeneChip® Fluidics Station 400 or Fluidics Station 450/250
800138	GeneChip® Hybridization Oven
00-0186	GeneChip® Scanner 3000 with high-resolution scanning patch

Related Products

Part #	Description	Details
901153	Genome-Wide Human SNP Array 6.0
901167	Genome-Wide Human SNP Array 5.0

FAQs

Human Mapping 100K Set

Manuals

100K Mapping Assay Manual (pdf, 1.2 MB)

Probe Set Data in MAGE-ML Format

Sample Data

Mapping 100k HapMap Trio Dataset

Material Safety Data Sheets

Mapping 100K Array Set, Hind Array (zip, 288 KB)

Mapping 100K Array Set, Xba Array (zip, 288 KB)

Library Files

Mapping 50K Hind 240 Array (zip, 16 MB)

Mapping 50K Xba 240 Array (zip, 17 MB)

Package Inserts

Human Mapping 50K Array Xba 240 and Human Mapping 50K Array Hind 240 (pdf, 71 KB)

Human Mapping 50K Xba Assay kit and Human Mapping 50K Hind Assay Kit (pdf, 43 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

Mapping50K_Hind240 Annotations, CSV format (12 MB, 7/9/08)

Mapping50K_Xba240 Annotations, CSV format (12 MB, 7/9/08)

Mapping50K_Hind240 Annotations, GDAS3 (15 MB, 6/27/05)

Mapping50K_Xba240 Annotations, GDAS3 (16 MB, 6/27/05)

Mapping50K_Hind240 Annotations, GTYPE Format (12 MB, 1/2/07)

Mapping50K_Xba240 Annotations, GTYPE Format (13 MB, 1/2/07)

Mapping50K_Hind240 GC Content Data, NCBI Build 36, TSV Format (806 KB, 1/2/07)

Mapping50K_Xba240 GC Content Data, NCBI Build 36, TSV Format (895 KB, 1/2/07)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.