News and Events

12/9/2008

Affymetrix Technology Powers Cincinnati Children's Hospital's Innovative Test for Jaundice

12/8/2008

Affymetrix Completes Acquisition of Panomics

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Plant and Animal Genome XVII Conference

1/10/2009-1/14/2009

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Achieving ROI in Personalized Medicine: Barriers, Incentives, and Pathways to Commercialization

1/27/2009-1/28/2009

Scientific Publications

Search our database of 16170 publications.

GeneChip^® Mapping 10K 2.0 Array

The GeneChip® Human Mapping 10K Array Xba 142 2.0 (GeneChip® Mapping 10K 2.0 Array) enables researchers to genotype more than 10,000 SNPs in a single experiment with one primer. The GeneChip Mapping 10K 2.0 Array contains equivalent content and performance as the original GeneChip® Mapping 10K Array, but advances in photolithographic technology enable it to be produced in a smaller, more cost-efficient format.

The GeneChip® Mapping 100K Set has also been used for other applications, including population genetics, linkage disequilibrium analysis, and whole-genome association studies. The GeneChip® Mapping 500K Array Set provides more power to understand the genetic differences between individuals, and is the recommended product for these applications.

100,000 SNPs

Features & Benefits

Requires only 250 ng of genomic DNA per sample
Easy-to-use, proven assay that has been validated in nearly 250 publications (pdf, 159 KB)
10,000 SNPs provide higher information content for better results
Extensive SNP annotation in the NetAffx™ Analysis Center
Export data in MERLIN- and GeneHunter-compatible formats
Additional coverage on chromosomes 19 and X, as compared to the original Mapping 10K Array

Applications

Linkage analysis: 10,000 SNPs provide more information for better results
Find linkage regions missed by microsatellite analysis
Cancer genetics: detect chromosomal amplification, deletion, and genotypes in a single experiment
Population Genetics: measure allele frequency distributions between populations with thousands of markers
Comparison of genome coverage between 10,204 SNPs on Mapping 10K 2.0 with 400 microsatellite markers

If you'd like to search for SNPs by genomic location, use the NetAffx Analysis Center's UCSC Genomic Query Tool

Instrument and Software Requirements

GeneChip® Operating Software (GCOS)
GeneChip® Genotyping Analysis Software (GTYPE)
GeneChip® Fluidics Station 400 or Fluidics Station 450/250
GeneChip® Hybridization Oven
GeneChip® Scanner 3000

Affymetrix recommends upgrading to the latest technologies in order to best maximize your experiments. The 10k2 array is offered for historical research, while the 100K, 500K and SNP 6.0 arrays should be used for current research.

For more information, please review the data sheet (pdf, 217 KB).

Data Sheets

Human Mapping 10K Array Xba 142 2.0 (pdf, 217 KB)

Application Notes

Microarrays in Cancer Research (pdf, 423 KB)

Part #	Description	Details
900540	GeneChip® Human Mapping 10K Array Xba 142 2.0	Contains 30 arrays
900441	GeneChip® Mapping 10K Xba Assay Kit	Sufficient for 30 reactions
900534	PCR Primer 001	Sufficient for 100 reactions

Related Products

Part #	Description	Details
901153	Genome-Wide Human SNP Array 6.0	See product page for more information
900767/900768	GeneChip® Human Mapping 500K Array Set	See product page for more information
901167	GeneChip® Human Mapping 100K Set	See product page for more information

Manuals

10K 2.0 Mapping Assay Manual (pdf, 1.2 MB)

Probe Set Data in MAGE-ML Format

Material Safety Data Sheets

Mapping 10k Array Set (zip, 288 KB)

Library Files

Mapping 10K 2.0 Array (zip, 9.1 MB)

Package Inserts

Human Mapping 10K 2.0 Xba Assay Kit (pdf, 41 KB)

Human Mapping 10K Array Xba 142 2.0 (pdf, 70 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

Mapping10K_Xba142 Annotations, CSV format (3.0 MB, 11/25/08)

Mapping10K_Xba142 Annotations, GDAS3 (3.3 MB, 9/20/05)

Mapping10K_Xba142 Annotations, GTYPE Format (2.2 MB, 1/2/07)

Mapping10K_Xba142 GC Content Data, NCBI Build 36, TSV Format (146 KB, 1/2/07)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.