News and Events
12/9/2008
Affymetrix Technology Powers Cincinnati Children's Hospital's Innovative Test for Jaundice
12/8/2008
Affymetrix Completes Acquisition of Panomics
Plant and Animal Genome XVII Conference
1/10/2009-1/14/2009
Achieving ROI in Personalized Medicine: Barriers, Incentives, and Pathways to Commercialization
1/27/2009-1/28/2009
Scientific Publications
GeneChip® Bovine Mapping 10K SNP Kit
The Affymetrix GeneChip® Bovine Mapping 10K SNP Kit contains approximately 10,000 SNPs that are multiplexed in a single assay. These SNPs allow researchers to perform linkage mapping studies on bovine breeds with no bias toward either beef or dairy.
The SNPs on the panel were validated across 15 Bos taurus and Bos indicus breeds and include several quantitative trait loci (QTLs) of interest to beef and dairy cattle breeders. The panel also includes SNPs from two African Sanga breeds.
The majority of the SNPs were discovered as part of the Bovine Sequencing Project and were validated at Affymetrix. In both the 10K and 25K SNP kits, genotype data is generated in a single multiplexed assay using proven molecular inversion probe (MIP) technology in combination with Affymetrix universal tag arrays, and scanned on an Affymetrix GeneChip® Scanner 3000 TG System.
Literature
Khatkar M. S., et al. A Primary Assembly of a Bovine Haplotype Block Map Based on a 15,036-Single-Nucleotide Polymorphism Panel Genotyped in Holstein-Friesian Cattle. Genetics 176:763-772 (2007).
Additional Materials
Brochures
Data Sheets
Data Sheet, Bovine Mapping 10K SNP Kit (pdf, 98K)
White Papers
Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
| Part # | Description | Details |
|---|---|---|
| 900870 | GeneChip® Bovine Mapping 10K SNP Kit | Kit contains enough reagents to process a total of 24 assays (23 customer samples and one kit control) |
| 901187 | GeneChip® Universal 10K Tag Array 24 Pack | Each pack contains 24 arrays, enough to process one Bovine Mapping 10K SNP Kit |
Related Products
| Part # | Description | Details |
|---|---|---|
| 000538 | GeneChip® Bovine Mapping 10K SNP Service | For more information on pricing, minimum number of samples or a list of third-party service providers, please consult the Affymetrix Services Home Page. |
Assay Panel Files
Assay Panel File, Bovine Mapping 10K SNP Kit (zip, 159 KB)
Manuals
Targeted Genotyping Analysis (GTGS) User's Guide, includes TG protocol (pdf, 1.9 MB)
Targeted Genotyping System Site Preparation Guide (pdf, 892 KB)
Targeted Genotyping System User's Guide (pdf, 4.04 MB)
Quick Reference Cards
Targeted Genotyping Quick Reference Card, includes TG Protocol (zip, 1.62 MB)
User Bulletin, Affymetrix Targeted Genotyping System (pdf, 69 KB)
Material Safety Data Sheets
Bovine Mapping 10K SNP Kit (pdf, 82 KB)
Targeted Genotyping Wash Solution A (pdf, 26 KB)
Targeted Genotyping Wash Solution B (pdf, 26 KB)
Additional Support
Custom Panel Design Guide (zip, 143KB)
Custom Panel Design Request Form (zip, 12 KB)