News and Events
12/9/2008
Affymetrix Technology Powers Cincinnati Children's Hospital's Innovative Test for Jaundice
12/8/2008
Affymetrix Completes Acquisition of Panomics

Plant and Animal Genome XVII Conference
1/10/2009-1/14/2009
Achieving ROI in Personalized Medicine: Barriers, Incentives, and Pathways to Commercialization
1/27/2009-1/28/2009
Scientific Publications
The Affymetrix GeneChip® Mouse Mapping 5K SNP Kit contains approximately 5,000 SNPs in a single, highly multiplexed assay. It allows researchers to perform high-resolution linkage mapping studies on mouse strains, resulting in approximately 1,500 informative markers for every cross of 20 common strains. With the Mouse Mapping 5K SNP Kit, data is generated using proven molecular inversion probe (MIP) technology in combination with GeneChip® Universal Tag Arrays, and scanned on a Scanner 3000 TG System.
Related Publications
Laurie C. C., et al. Linkage Disequilibrium in Wild Mice. PLoS Genet 3(8): 1,487-1,495 (2007).
Additional Materials
Brochures
Data Sheets
Mouse Mapping 5K SNP Kit (pdf, 286 KB)
White Papers
Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
| Part # | Description | Details |
|---|---|---|
| 900869 | Affymetrix GeneChip® Mouse Mapping 5K SNP Kit | Kit contains enough reagents to process a total of 24 assays (23 customer samples and one kit control) |
| 901186 | Affymetrix GeneChip® Universal 5K Tag Array - 24 Pack | Each pack contains 24 arrays, enough to process one Mouse Mapping 5K SNP Kit |
Related Products
| Part # | Description | Details |
|---|---|---|
| 000531 | Affymetrix GeneChip® Mouse Mapping 5K SNP Service | For more information on pricing, minimum number of samples or a list of third-party service providers, please consult the Affymetrix Services Home Page. |
Assay Panel Files
Mouse Mapping 5K SNP Kit (zip, 97 KB)
Manuals
Targeted Genotyping Analysis (GTGS) User's Guide, includes TG protocol (pdf, 1.9 MB)
Targeted Genotyping System Site Preparation Guide (pdf, 892 KB)
Targeted Genotyping System User's Guide (pdf, 4.04 MB)
Quick Reference Cards
Targeted Genotyping Quick Reference Card, includes TG Protocol (zip, 1.62 MB)
User Bulletin, Affymetrix Targeted Genotyping System (pdf, 69 KB)
Material Safety Data Sheets
Mouse Mapping 5K SNP Kit (pdf, 82 KB)
Targeted Genotyping Wash Solution A (pdf, 26 KB)
Targeted Genotyping Wash Solution B (pdf, 26 KB)
Additional Support
Custom Panel Design Guide (zip, 143KB)
Custom Panel Design Request Form (zip, 12 KB)



