Overview

GeneChip® Targeted Genotyping Analysis Software (GTGS) is part of the GeneChip® Targeted Genotyping System. GTGS is specifically designed to give highly accurate, automated SNP allele calls for the Targeted Genotyping MIP assay, available for both application-specific fixed assays and custom SNP assays.

Access to GTGS Software

GTGS software is acquired through the purchase of the Scanner 3000 Targeted Genotyping System. New for GTGS 1.6 is support for GeneChip® Command Console. For a complete list of changes, see About GTGS 1.6.

The GTGS 1.6 installer will upgrade existing GTGS 1.5 systems. New installs of GTGS 1.6 require Microsoft SQL Server 2005 Workgroup Edition to be pre-installed.

Download Information

Download GTGS 1.6 (zip, 42.8 MB)  * Posted on 03/27/08

Benefits

• Robust genotype calling
• Integrated sample tracking for the assay
• Many data visualization tools for quality control
• Mendelian Inheritance check for genotype accuracy
• Y-chromosome SNP controls to infer sample gender
• Infrastructure to support large studies - 5000 samples per project
• Multiple text-based data export options

Related Products

GeneChip® Custom SNP Kits
GeneChip® Universal Tag Arrays
GeneChip® Targeted Genotyping System
GeneChip® Command Console® Software (AGCC)

Technical Notes

Installation Verification, AGCC with GTGS 1.6 (pdf, 158 KB)

Installation Verification, GCOS with GTGS 1.6 (pdf, 158 KB)

Microsoft Windows Authentication (pdf, 127 KB)

Microsoft Windows XP SP2 and Firewall Settings for the TG System (pdf, 568 KB)

Symantec Norton AntiVirus Configuration for the TG System (pdf, 614 KB)

Manuals

Targeted Genotyping System User's Guide (pdf, 4.04 MB)

Additional Support

About GTGS 1.6 (pdf, 29 KB)

Affymetrix Software Support Policy

Release Notes, GTGS 1.6 (pdf, 41 KB)

Back to Top >