Exon 1.0 ST Array Expression Data Sets

Sample data generated using the single strand amplified whole transcript protocol.

Exon 1.0 ST Array Sample Data from the Human, Mouse and Rat Exon 1.0 ST Arrays, including:

• Tissue panel data sets on all three arrays
• Tissue mixture data set on both the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array
• Small colon cancer data set on the Human Exon 1.0 ST Array

Gene 1.0 ST Array Sample Data Sets

Gene 1.0 ST Array Sample Data from the Human, Mouse and Rat Gene 1.0 ST Arrays, including:

• Tissue panel data sets on all three arrays
• Tissue mixture data set on the Human Gene 1.0 ST Array, the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array

Genotyping Mapping Data Sets

Genome-Wide Human SNP Array 6.0 Sample Data Set

Genome-Wide Human SNP Array 5.0 Sample Data Set

Genotype and Allele Frequency Data

Mapping 500K HapMap Genotype Data Set

Mapping 500K Sample Data Set

Mapping 100K HapMap Trio Dataset

Mapping 10K Sample Data

CNAT Reference Data Sets

The Copy Number Analysis Tool (CNAT) Reference Data Set is designed to provide the full reference data used in development of the 10K and 100K CNAT 3.0 Reference Set.

Copy Number Analysis Data Sets

A collection of Copy Number Analysis Sample Data using both the Affymetrix Human Mapping 100K and 500K arrays to produce estimates of genomic copy number.

Cytogenetics Sample Data

Ten cytogenetic samples are available for analysis in Genotyping Console. This Cytogenetics Sample Data represent cases from Angelman/Prader-Willi, Smith-Magenis, Trisomy13 and many more Syndromes

Tiling Arrays For Regulation & Transcript Mapping

These Tiling Array Sample Data sets leverage various Tiling Arrays with the CHiP-on-chip assay to identify genomic binding locations of DNA binding proteins of interest.

3' Expression Data Sets

High Throughput Plate Data
Zipped GCO EXP/CEL files used in performance whitepaper.

3' Expression Sample Data
Zipped files with sample GeneChip probe array data (.exp, .dat, .cel., .dat, .rpt, files) for a variety of expression and genotyping arrays.

Latin Square Data
Zipped collection of files of 3' Expression Data from Human U95 and U133 array containing spikes at known concentrations for the purpose of algorithm development.

Human Tiling 1.0 & Human U133 Expression Data

Data is from: Carroll J. S., et al. Genome-wide Analysis of Estrogen Receptor Binding Sites. Nature Genetics38(11):1289-97 (2006).

Affymetrix thanks the laboratories of Shirley Liu and Myles Brown for permission to redistribute these data.

Data is hosted on the Affymetrix Secure File Exchange (FTP) due to its size. For access to this data set, please email webmaster@affymetrix.com.

Resequencing Data

This dataset contains 14 Mitov2 array .cel files generated from the Human Mitochondrial Resequencing Array 2.0. The probe array files represent 3 sets of CEPH trios including 2 sets of technical replicates and 2 human mito standard samples.

Human Mitochondrial Resequencing Array 2.0 (zip, 25.4 MB) >