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Home > Support > NetAffx™ Analysis Center Help Resources > Annotation Update Release Notes > Annotation Release 21 Notes
NetAffx Annotation Release 21 Notes
November 2006
This table lists the Data sources used for NetAffx Annotation Release 21, including the Version number, if there is one, and the date of the release. Data sources that cover multiple species are listed first, followed by more species-specific sources.
Data source |
Mol Type |
Release Date |
Version |
Species |
Description |
Notes |
|---|---|---|---|---|---|---|
GenBank |
mRNA, peptide |
15-Aug-06 |
155 |
All |
full and partial mRNA records, CDS translations, and mRNA/peptide derived from organellar DNA. NR clustered (*) |
|
RefSeq |
mRNA, peptide |
11-Jul-06 |
18 |
All |
mRNA records, CDS translations and mRNA/peptide derived from organellar DNA. NR clustered (*) |
|
UniProt |
protein |
22-Aug-06 |
8.5 |
All |
Protein sequence data from both Swiss-Prot 50.5 and TrEMBL 33.5 |
|
Entrez Gene |
mRNA |
29-Aug-06 |
All |
Gene information database derived from RefSeq, model organism databases, and other NCBI databases |
||
Ensembl |
mRNA, peptide |
Aug-06 |
40 |
Anopheles gambiae |
cDNA and peptide sequence including non-hypothetical, ab initio and EST-based transcripts |
For D. melanogaster and S. cerevisiae, we use predicted transcripts from Ensembl and other annotated transcripts from Flybase and SGD, respectively |
Bos taurus |
||||||
Caenorhabditis elegans |
||||||
Canis familiaris |
||||||
Danio rerio |
||||||
Drosophila melanogaster |
||||||
Gallus gallus |
||||||
Homo sapiens |
||||||
Mus musculus |
||||||
Rattus norvegicus |
||||||
Saccharomyces cerevisiae |
||||||
Xenopus tropicalis |
||||||
UniGene |
mRNA |
13-Jun-06 |
33 |
Anopheles gambiae |
EST-based non-redundant gene-oriented clusters |
|
14-Jul-06 |
54 |
Arabidopsis thaliana |
||||
15-Jun-06 |
79 |
Bos taurus |
||||
3-Jul-06 |
30 |
Caenorhabditis elegans |
||||
16-Jul-06 |
16 |
Canis familiaris |
||||
12-Jul-05 |
6 |
Citrus sinensis |
||||
31-Jul-06 |
93 |
Danio rerio |
||||
16-Jul-06 |
45 |
Drosophila melanogaster |
||||
2-Aug-05 |
31 |
Gallus gallus |
||||
6-Aug-05 |
25 |
Glycine max |
||||
7-May-06 |
191 |
Homo sapiens |
||||
3-Aug-06 |
46 |
Hordeum vulgare |
||||
3-Aug-06 |
25 |
Lycopersicon esculentum |
||||
3-Aug-06 |
5 |
Macaca mulatta |
||||
7-Aug-06 |
25 |
Medicago truncatula |
||||
27-Apr-06 |
153 |
Mus musculus |
||||
15-Jul-06 |
62 |
Oryza sativa |
||||
27-May-05 |
1 |
Populus balsamifera |
||||
1-Dec-05 |
9 |
Populus tremula x Populus tremuloides |
||||
3-Jul-06 |
1 |
Populus trichocarpa |
||||
19-Jul-06 |
155 |
Rattus norvegicus |
||||
2-Jul-06 |
7 |
Saccharum officinarum |
||||
3-Aug-06 |
25 |
Solanum tuberosum |
||||
30-Jul-06 |
25 |
Sus scrofa |
||||
31-Jul-06 |
46 |
Triticum aestivum |
||||
26-Jul-06 |
19 |
Vitis vinifera |
||||
31-Jul-06 |
70 |
Xenopus laevis |
||||
4-Aug-06 |
31 |
Xenopus tropicalis |
||||
8-Aug-06 |
58 |
Zea mays |
||||
UCSC |
DNA |
Feb-03 |
anoGam1 |
Anopheles gambiae |
Nuclear and mitochondrial genome assemblies |
|
May-05 |
bosTau2 |
Bos taurus |
||||
Mar-04 |
ce2 |
Caenorhabditis elegans |
||||
May-05 |
canFam2 |
Canis familiaris |
||||
Mar-06 |
danRer4 |
Danio rerio |
||||
Mar-06 |
hg18 |
Homo sapiens |
||||
Mar-06 |
mm8 |
Mus musculus |
||||
May-06 |
galGal3 |
Gallus gallus |
||||
Jan-06 |
rheMac2 |
Macaca mulatta |
||||
Nov-04 |
rn4 |
Rattus norvegicus |
||||
Oct-03 |
sacCer1 |
Saccharomyces cerevisiae |
||||
RefSeq |
Mitochondrial DNA, mRNA, peptide |
Oct-05 |
Arabidopsis thaliana |
Organellar genome assembly |
Gene, CDS, and peptide sequences were extracted from the RefSeq genome records. |
|
Nov-05 |
Oryza sativa |
|||||
Chloroplast DNA, mRNA, peptide |
Oct-05 |
Arabidopsis thaliana |
||||
Nov-05 |
Oryza sativa |
|||||
| Sanger |
DNA |
4-Jul-05 |
Schizosaccharomyces pombe |
Nuclear genome assembly |
||
mRNA, peptide |
17-May-06 |
Schizosaccharomyces pombe |
All ORF CDS |
|||
SGD |
mRNA, peptide |
12-May-06 |
Saccharomyces cerevisiae |
All ORF CDS |
||
TIGR |
DNA |
13-May-04 |
Arabidopsis thaliana |
Nuclear genome assembly |
||
mRNA |
6-Oct-05 |
Medicago truncatula |
Predicted CDS sequences from IMGAG |
|||
DNA |
12-Jan-06 |
4 |
Oryza sativa |
Rice pseudomolecules - nuclear genome assembly |
||
mRNA |
12-Jan-06 |
4 |
Oryza sativa |
Rice pseudomolecules -
transcripts |
||
DNA |
1-Aug-04 |
pfa1 |
Plasmodium falciparum |
Nuclear genome assembly |
||
mRNA |
1-Aug-04 |
pfa1 |
Plasmodium falciparum |
cDNA sequences |
||
BIS_RIS |
mRNA |
1-Aug-04 |
Oryza sativa |
Fgene-based predictions (Syngenta) |
||
miRBase |
miRNA |
Sep-06 |
9.0 |
Homo sapiens |
Precursor miRNA stem-loop sequences |
Used only for exon arrays. Not yet accessible via NetAffx. Contact us if interested. |
Mus musculus |
||||||
Rattus norvegicus |
||||||
JGI |
DNA |
Jun-04 |
1.0 |
Populus
trichocarpa |
Nuclear genome
assembly, 7.5x coverage |
|
mRNA |
13-Feb-06 |
1.0 |
Populus
trichocarpa |
Transcripts from predicted gene models |
||
FlyBase |
DNA |
17-Apr-06 |
5.0 |
Drosophila melanogaster |
Nuclear genome assembly |
|
mRNA, peptide |
21-Feb-06 |
4.3 |
Drosophila melanogaster |
Genome sequence
annotations |
||
PseudoCAP |
mRNA, peptide |
12-Jul-06 |
Pseudomonas aeruginosa |
Pseudomonas community annotation project |
Release date is the date downloaded |
