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This table lists the Data sources used for NetAffx Annotation Release 24, including the Version number, if there is one, and the date of the release. Data sources that cover multiple species are listed first, followed by more species-specific sources.

Data source	Mol Type	Release Date	Version	Species	Description	Notes
GenBank	mRNA, peptide	15-Aug-07	161	All	full and partial mRNA records, CDS translations, and mRNA/peptide derived from organellar DNA. NR clustered (*)
RefSeq	mRNA, peptide	10-Jul-07	24	All	mRNA records, CDS translations and mRNA/peptide derived from organellar DNA. NR clustered (*)
UniProt	protein	21-Aug-07	12.1	All	Protein sequence data from both Swiss-Prot 54.1 and TrEMBL 37.1
Entrez Gene	mRNA	22-Aug-07		All	Gene information database derived from RefSeq, model organism databases, and other NCBI databases
Ensembl	mRNA, peptide	Aug-07	46	Anopheles gambiae	cDNA, ncRNA, and peptide sequence including non-hypothetical, ab initio and EST-based transcripts	For D. melanogaster and S. cerevisiae, we use predicted transcripts from Ensembl and other annotated transcripts from Flybase and SGD, respectively
				Bos taurus
				Caenorhabditis elegans
				Canis familiaris
				Danio rerio
				Drosophila melanogaster
				Gallus gallus
				Homo sapiens
				Mus musculus
				Rattus norvegicus
				Saccharomyces cerevisiae
				Xenopus tropicalis
UniGene	mRNA	29-Jun-07	36	Anopheles gambiae	EST-based non-redundant gene-oriented clusters
		24-Jul-07	61	Arabidopsis thaliana
		01-Aug-07	85	Bos taurus
		15-Jun-07	35	Caenorhabditis elegans
		29-Jun-07	19	Canis familiaris
		15-May-07	9	Citrus sinensis
		01-Aug-07	105	Danio rerio
		23-May-07	50	Drosophila melanogaster
		29-Jun-07	34	Gallus gallus
		20-Jun-07	29	Glycine max
		10-Jul-07	204	Homo sapiens
		18-Jul-07	50	Hordeum vulgare
		23-Feb-07	27	Lycopersicon esculentum
		19-Jun-07	8	Macaca mulatta
		04-Jun-07	26	Medicago truncatula
		10-Jul-07	165	Mus musculus
		03-Jul-07	68	Oryza sativa
		27-May-05	1	Populus balsamifera
		31-Jan-07	12	Populus tremula x Populus tremuloides
		23-May-07	4	Populus trichocarpa
		28-Jul-07	165	Rattus norvegicus
		18-Jul-07	11	Saccharum officinarum
		26-Jul-07	29	Solanum tuberosum
		05-Aug-07	30	Sus scrofa
		23-Apr-07	48	Triticum aestivum
		20-Jul-07	3	Vitis vinifera
		03-Aug-07	78	Xenopus laevis
		22-Jun-07	38	Xenopus tropicalis
		05-Aug-07	65	Zea mays
UCSC	DNA	Feb-03	anoGam1	Anopheles gambiae	Nuclear and mitochondrial genome assemblies
		Aug-07	bosTau3	Bos taurus
		Mar-04	ce2	Caenorhabditis elegans
		May-05	canFam2	Canis familiaris
		Mar-06	danRer4	Danio rerio
		Apr-06	dm3	Drosophila melanogaster
		Mar-06	hg18	Homo sapiens
		Mar-06	mm8	Mus musculus
		May-06	galGal3	Gallus gallus
		Jan-06	rheMac2	Macaca mulatta
		Nov-04	rn4	Rattus norvegicus
		Oct-03	sacCer1	Saccharomyces cerevisiae
RefSeq	Mitochondrial DNA, mRNA, peptide	Oct-05		Arabidopsis thaliana	Organellar genome assembly	Gene, CDS, and peptide sequences were extracted from the RefSeq genome records.
		Nov-05		Oryza sativa
	Chloroplast DNA, mRNA, peptide	Oct-05		Arabidopsis thaliana
		Nov-05		Oryza sativa
Sanger	DNA	4-Jul-05		Schizosaccharomyces pombe	Nuclear genome assembly
	mRNA, peptide	17-May-06		Schizosaccharomyces pombe	All ORF CDS
SGD	mRNA, peptide	12-May-06		Saccharomyces cerevisiae	All ORF CDS
TIGR	DNA	13-May-04		Arabidopsis thaliana	Nuclear genome assembly
	mRNA	6-Oct-05		Medicago truncatula	Predicted CDS sequences from IMGAG
	DNA	12-Jan-06	4	Oryza sativa	Rice pseudomolecules - nuclear genome assembly
	mRNA	12-Jan-06	4	Oryza sativa	Rice pseudomolecules - transcripts
	DNA	1-Aug-04	pfa1	Plasmodium falciparum	Nuclear genome assembly
	mRNA	1-Aug-04	pfa1	Plasmodium falciparum	cDNA sequences
BGI_RIS	mRNA	1-Aug-04		Oryza sativa	Fgene-based predictions (Syngenta)
miRBase	miRNA	Sep-06	9.0	Homo sapiens	Precursor miRNA stem-loop sequences	Used only for annotating exon arrays.
				Mus musculus
				Rattus norvegicus
JGI	DNA	Jun-04	1.0	Populus trichocarpa	Nuclear genome assembly, 7.5x coverage
	mRNA	13-Sep-06	1.1	Populus trichocarpa	Transcripts from predicted gene models
FlyBase	mRNA, peptide	08-Dec-06	5.1	Drosophila melanogaster	Genome sequence annotations
PseudoCAP	mRNA, peptide	12-Jul-06		Pseudomonas aeruginosa	Pseudomonas community annotation project	Release date is the date downloaded

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