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Annotation files are for use by any interested party to understand what biological entities are represented on GeneChip® brand arrays. Software developers who are interested in programmatic access and updates to NetAffx information should learn about the NetAffx SDK.

Instructions

WinZip is required for accessing the files. Download and install a free evaluation version of WinZip. Then, download the zipped files to your hard drive using the links below and double click on the downloaded file to open WinZip and begin the installation.

For large files, we recommend that you first download a free download manager to expedite the process. The manager will allow you to speed up, schedule and pause/resume any downloads from the site. Download the free download manager prior to selecting your annotation file. Then, double click on the Affymetrix file you wish to access.

Downloads

Annotation information is stored in a single file for each array type. This information is updated quarterly.

DNA Analysis Arrays

Catalog Arrays

• GC Content Data, NCBI Build 36, TSV Format (146 KB, 1/2/07)
• GC Content Data, NCBI Build 36, TSV Format (3.5 MB, 1/2/07)
• GC Content Data, NCBI Build 36, TSV Format (3.8 MB, 1/2/07)
• GC Content Data, NCBI Build 36, TSV Format (806 KB, 1/2/07)
• GC Content Data, NCBI Build 36, TSV Format (895 KB, 1/2/07)
• GenomeWideSNP_5 Annotations, CSV format (144 MB, 10/1/08)
• GenomeWideSNP_6 Annotations, CSV format (301 MB, 10/3/08)
• Mapping10K_Xba142 Annotations, CSV format (3.3 MB, 7/9/08)
• Mapping250K_Nsp Annotations, CSV format (87 MB, 7/9/08)
• Mapping250K_Sty Annotations, CSV format (81 MB, 7/9/08)
• Mapping50K_Hind240 Annotations, CSV format (12 MB, 7/9/08)
• Mapping50K_Xba240 Annotations, CSV format (12 MB, 7/9/08)

Gene Expression Analysis Arrays

Exon Arrays

• HuEx-1_0-st-v2 Transcript Cluster Annotations, CSV (17 MB, 7/17/08)
• HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV (11 MB, 7/17/08)
• MoEx-1_0-st-v1 Transcript Cluster Annotations, CSV (16 MB, 7/17/08)
• MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV (9.9 MB, 7/17/08)
• RaEx-1_0-st-v1 Transcript Cluster Annotations, CSV (14 MB, 7/17/08)
• RaGene-1_0-st-v1 Transcript Cluster Annotations, CSV (6.2 MB, 7/17/08)

3' IVT Expression Analysis Arrays

Catalog Arrays

• ATH1-121501 Annotations, CSV format (5.7 MB, 7/8/08)
• Bovine Annotations, CSV format (5.1 MB, 7/8/08)
• Canine_2 Annotations, CSV format (8.1 MB, 7/8/08)
• Celegans Annotations, CSV format (4.3 MB, 7/8/08)
• Chicken Annotations, CSV format (6.6 MB, 7/8/08)
• Citrus Annotations, CSV format (2.2 MB, 7/8/08)
• Cotton Annotations, CSV format (2.5 MB, 7/8/08)
• DrosGenome1 Annotations, CSV format (4.9 MB, 7/8/08)
• Drosophila_2 Annotations, CSV format (6.5 MB, 7/8/08)
• E_coli_2 Annotations, CSV format (2.5 MB, 7/8/08)
• Ecoli_ASv2 Annotations, CSV format (1.5 MB, 7/8/08)
• HG-Focus Annotations, CSV format (4.7 MB, 7/8/08)
• HG-U133A Annotations, CSV format (10 MB, 7/8/08)
• HG-U133A_2 Annotations, CSV format (10 MB, 7/8/08)
• HG-U133B Annotations, CSV format (7.7 MB, 7/8/08)
• HG-U133_Plus_2 Annotations, CSV format (20 MB, 7/8/08)
• HT_HG-U133A Annotations, CSV format (10 MB, 7/8/08)
• HT_HG-U133B Annotations, CSV format (7.7 MB, 7/8/08)
• HT_HG-U133_Plus_PM Annotations, CSV format (20 MB, 9/15/08)
• HT_MG-430A Annotations, CSV format (9.2 MB, 7/8/08)
• HT_MG-430B Annotations, CSV format (5.8 MB, 7/8/08)
• HT_MG-430_PM Annotations, CSV format (15 MB, 9/15/08)
• HT_Rat-Focus Annotations, CSV format (7.5 MB, 7/8/08)
• HT_Rat230_PM Annotations, CSV format (8.6 MB, 9/15/08)
• MOE430A Annotations, CSV format (9.3 MB, 7/8/08)
• MOE430B Annotations, CSV format (5.8 MB, 7/8/08)
• Maize Annotations, CSV format (2.5 MB, 7/8/08)
• Medicago Annotations, CSV format (3.2 MB, 7/8/08)
• Mouse430A_2 Annotations, CSV format (9.3 MB, 7/8/08)
• Mouse430_2 Annotations, CSV format (15 MB, 7/8/08)
• Null S. cerevisiae Tiling 1.0R Annotations, CSV (139 KB, 5/22/06)
• Pae_G1a Annotations, CSV format (539 KB, 7/8/08)
• Plasmodium_Anopheles Annotations, CSV format (2.9 MB, 7/8/08)
• Poplar Annotations, CSV format (5.0 MB, 7/8/08)
• Porcine Annotations, CSV format (3.4 MB, 7/8/08)
• RAE230A Annotations, CSV format (5.4 MB, 7/8/08)
• RAE230B Annotations, CSV format (3.3 MB, 7/8/08)
• Rat230_2 Annotations, CSV format (8.7 MB, 7/8/08)
• RatToxFX Annotations, CSV format (818 KB, 7/8/08)
• Rhesus Annotations, CSV format (8.3 MB, 7/8/08)
• Rice Annotations, CSV format (7.0 MB, 7/8/08)
• Soybean Annotations, CSV format (7.0 MB, 7/8/08)
• Sugar_Cane Annotations, CSV format (1.8 MB, 7/8/08)
• Tomato Annotations, CSV format (1.4 MB, 7/8/08)
• Vitis_Vinifera Annotations, CSV format (3.2 MB, 7/8/08)
• Wheat Annotations, CSV format (7.3 MB, 7/8/08)
• X_tropicalis Annotations, CSV format (8.9 MB, 7/8/08)
• Xenopus_laevis Annotations, CSV format (2.6 MB, 7/8/08)
• YG_S98 Annotations, CSV format (2.9 MB, 7/8/08)
• Yeast_2 Annotations, CSV format (2.9 MB, 7/8/08)
• Zebrafish Annotations, CSV format (3.5 MB, 7/8/08)

Made to Order Array Program

• HG_U95A Annotations, CSV format (6.1 MB, 7/8/08)
• HG_U95Av2 Annotations, CSV format (6.1 MB, 7/8/08)
• HG_U95B Annotations, CSV format (4.1 MB, 7/8/08)
• HG_U95C Annotations, CSV format (3.8 MB, 7/8/08)
• HG_U95D Annotations, CSV format (2.9 MB, 7/8/08)
• HG_U95E Annotations, CSV format (3.8 MB, 7/8/08)
• MG_U74Av2 Annotations, CSV format (5.5 MB, 7/8/08)
• MG_U74Bv2 Annotations, CSV format (4.2 MB, 7/8/08)
• MG_U74Cv2 Annotations, CSV format (3.1 MB, 7/8/08)
• RG_U34A Annotations, CSV format (3.0 MB, 7/8/08)
• RG_U34B Annotations, CSV format (1.8 MB, 7/8/08)
• RG_U34C Annotations, CSV format (2.1 MB, 7/8/08)
• RT_U34 Annotations, CSV format (410 KB, 7/8/08)
• S_aureus Annotations, CSV format (640 KB, 7/8/08)
• U133_X3P Annotations, CSV format (19 MB, 7/8/08)

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