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Assay Panel Files
These panel files are intended for GeneChip® Targeted Genotyping Software (GTGS) users in conjunction with the Targeted Genotyping reagents and arrays. Additional annotation files can be accessed on specific support pages.
Custom Assay Panel Files
Once you have received a message from the Affymetrix Custom Design Group indicating that your custom assay panel file is complete, please click here to download the files.
Targeted Genotyping Custom Assay Panel Files (and their associated GT Settings files) must be loaded into the GTGS software prior to beginning any experiments.
Additional Information
Standard Assay Panel Files
If you have purchased a Standard Targeted Genotyping SNP Kit, please click on the appropriate link below to download the correct assay panel file (and associated GT settings file). These 2 files must be loaded into the GTGS software prior to beginning any experiments.
- Bovine 10K Assay Panel File (zip, 159 KB) >
- Bovine 25K Assay Panel File (zip, 537 KB) >
- Human (Panels 1 & 2) cSNP 20K Assay Panel File (zip, 481 KB) >
- Immu-Inflammation 9K Assay Panel File (zip, 215 KB) >
- MALD 3K Assay Panel File (zip, 66 KB) >
- Mouse 5K Assay Panel File (zip, 97 KB) >
- Rat 10K Assay Panel File (zip, 286 KB) >
Standard Assay Panel Annotation Files
For annotation information on standard Targeted Genotyping products, please click on the appropriate link below to download the file from NetAffx.
- Bovine 10K Panel Annotations (444 KB, 6/15/06) >
- Bovine_25K Panel_R3 Annotations (1.9 MB, 7/9/08) >
- Human (Panels 1 and 2) 20K cSNP Panel Annotations (2.1 MB, 6/23/06) >
- Immune_and_Inflam_9KPanel_R1.5 Annotations (2.6 MB, 7/9/08) >
- MALD 3K Panel Annotations (220 KB, 6/15/06) >
- Mouse 5K Panel Annotations (293 KB, 6/15/06) >
- Rat 5K Panel Annotations (293 KB, 6/15/06) >
Array Definition Files
These files are intended for GeneChip® Targeted Genotyping Software (GTGS) users in conjunction with the Targeted Genotyping reagents and arrays. These files are required specifically with the GeneChip® Universal Tag Arrays. Information about each array can be accessed through the specific product pages for each array.